FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane3_Index18_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 18872182 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 50 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4153865 | 2.6298842 | 5.4194555 | 1 |
| CCTGG | 4114450 | 2.5847652 | 5.958221 | 1 |
| CTTCT | 4129120 | 2.5233939 | 6.2016983 | 1 |
| CTGGA | 3839145 | 2.4478116 | 9.479235 | 1 |
| TCCAG | 3789460 | 2.3663046 | 6.14781 | 2 |
| CTGCT | 3745675 | 2.3208575 | 5.4800053 | 1 |
| CTCCT | 3816265 | 2.3158305 | 8.744949 | 1 |
| CTGGG | 3536175 | 2.2682617 | 8.906035 | 1 |
| CAGGA | 3507685 | 2.253923 | 5.6053762 | 1 |
| CTTCA | 3594015 | 2.2135143 | 6.2800164 | 1 |
| CTCCA | 3556525 | 2.1750488 | 9.038092 | 1 |
| CCCAG | 3478980 | 2.1571784 | 7.5715933 | 1 |
| CAGAA | 3251715 | 2.0768971 | 5.0846014 | 1 |
| CTCTG | 3231040 | 2.0019846 | 6.877925 | 1 |
| CTGCA | 3166885 | 1.9775417 | 5.249587 | 1 |
| CTTCC | 3203785 | 1.9441582 | 5.124757 | 1 |
| CTGGC | 3013500 | 1.8931302 | 5.7974353 | 1 |
| TGGAA | 2877835 | 1.862274 | 5.427578 | 2 |
| CTGAA | 2898100 | 1.8367113 | 6.038096 | 1 |
| CTTTT | 2941135 | 1.8100965 | 5.2978005 | 1 |
| CTGAG | 2711220 | 1.7286546 | 5.3159738 | 1 |
| CTCAG | 2761720 | 1.7245388 | 6.8687286 | 1 |
| CTTTG | 2721215 | 1.698011 | 5.420775 | 1 |
| CTGGT | 2656120 | 1.6804137 | 5.5926785 | 1 |
| CTTGG | 2587200 | 1.636811 | 5.733373 | 1 |
| CTCCC | 2547490 | 1.5350461 | 5.6382775 | 1 |